Breakfast Egg Muffins with Bacon

Featured in: Weekend Rustic Recipes

These golden breakfast egg muffins combine whisked eggs with melted cheddar cheese, crispy bacon, and colorful bell peppers baked in a muffin tin. Ready in just 35 minutes, they're perfect for meal prep and busy mornings. Each portion delivers 11g of protein in a convenient handheld format that can be stored in the refrigerator for up to 5 days and reheated quickly in the microwave.

Updated on Sun, 01 Feb 2026 16:08:00 GMT
Golden-brown Breakfast Egg Muffins with cheddar, bacon, and peppers, served warm on a plate. Save
Golden-brown Breakfast Egg Muffins with cheddar, bacon, and peppers, served warm on a plate. | olivebriar.com

There was a Sunday morning when I woke up to six hungry people and nothing but eggs in the fridge. I cracked them into a muffin tin, tossed in whatever I could find—bacon bits, cheese, a lonely bell pepper—and twenty minutes later, everyone thought I'd planned it. That's when I realized egg muffins weren't just convenient, they were genius. Now I make them every week, and my mornings feel less like chaos and more like I have my life together.

I brought a batch to a potluck once, and three people asked for the recipe before I even sat down. One friend said she'd been buying frozen breakfast sandwiches for years and couldn't believe something this simple could replace them. I didn't tell her I'd forgotten the garlic powder that morning. She never knew, and they still disappeared in minutes.

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Ingredients

  • Large eggs: The foundation of the muffin, and using room temperature eggs helps them whisk smoother and bake more evenly.
  • Milk: Adds a little creaminess and keeps the texture soft instead of rubbery, whole milk works best but any kind will do.
  • Shredded cheddar cheese: Melts into golden pockets throughout the muffin, and I've learned pre-shredded works fine but freshly grated tastes richer.
  • Diced bell peppers: Bring sweetness and color, and I always use a mix of red and yellow because green can taste a little bitter when baked.
  • Diced onions: Add a subtle sharpness that balances the richness of the eggs and cheese.
  • Cooked and crumbled bacon: The smoky, salty flavor that makes these feel indulgent, though sausage or even leftover ham works just as well.
  • Salt, black pepper, garlic powder, and paprika: Simple seasonings that wake up the whole muffin without overpowering anything.
  • Cooking spray or olive oil: A light coating prevents sticking, and I've had the best luck with a quick spray followed by a wipe with a paper towel.

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Instructions

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Preheat and Prep:
Set your oven to 350°F and give your muffin tin a generous coat of cooking spray. Don't skip this step or you'll be prying muffins out with a butter knife later.
Whisk the Base:
In a large bowl, whisk the eggs and milk together until they're frothy and pale yellow. The more air you whisk in, the fluffier your muffins will be.
Fold in the Fillings:
Stir in the cheese, bell peppers, onions, bacon, and all the seasonings until everything is evenly distributed. I like to give it a final stir right before pouring to make sure the bacon doesn't all sink to the bottom.
Fill the Tin:
Pour the mixture into each muffin cup, filling them about two-thirds full. They'll puff up as they bake, so leave a little room at the top.
Bake Until Golden:
Slide the tin into the oven and bake for 18 to 20 minutes, until the tops are lightly golden and a toothpick comes out clean. The edges will pull away slightly from the tin when they're ready.
Cool and Release:
Let the muffins rest in the tin for five minutes before gently loosening them with a knife. They'll firm up as they cool and come out much easier.
Savory Breakfast Egg Muffins topped with melted cheddar and crumbled bacon, fresh from the oven. Pin it
Savory Breakfast Egg Muffins topped with melted cheddar and crumbled bacon, fresh from the oven. | olivebriar.com

The first time my daughter reheated one of these herself before school, I realized I'd accidentally taught her something useful. She didn't ask for help, didn't complain about what was for breakfast, just grabbed a muffin and went. It was a small moment, but it felt like I'd given her a tiny piece of independence wrapped in melted cheddar.

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How to Store and Reheat

Once the muffins are completely cool, stack them in an airtight container with a piece of parchment between layers if you want to be fancy. They'll keep in the fridge for up to five days, and I reheat mine in the microwave for about 30 seconds. If you're freezing them, wrap each one individually in plastic wrap, then toss them all in a freezer bag—they'll last up to three months and thaw overnight in the fridge.

Ways to Mix It Up

I've made these with crumbled sausage, diced ham, sautéed mushrooms, fresh spinach, and even leftover roasted vegetables. My favorite variation uses feta cheese and sun-dried tomatoes, which sounds fancy but takes zero extra effort. If you want them vegetarian, skip the meat and double up on the veggies—just make sure anything with moisture, like tomatoes or zucchini, is patted dry first or the muffins will turn out soggy.

Serving Suggestions

These are perfect on their own, but I love serving them with a dollop of salsa or a drizzle of hot sauce for a little kick. Sometimes I'll set out a bowl of Greek yogurt mixed with chives, and people dip them like they're fancy hors d'oeuvres. If you're feeding a crowd, arrange them on a platter with fresh fruit and toast, and suddenly you have a breakfast spread that looks like you tried.

  • Pair with avocado slices and a sprinkle of flaky salt for a California vibe.
  • Serve alongside hash browns or roasted potatoes for a heartier meal.
  • Wrap one in a tortilla with a little salsa for an on-the-go breakfast burrito.
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Close-up of a fluffy, gluten-free Breakfast Egg Muffin with colorful bell peppers and onions. Pin it
Close-up of a fluffy, gluten-free Breakfast Egg Muffin with colorful bell peppers and onions. | olivebriar.com

These egg muffins have saved more mornings than I can count, and they've turned me into the kind of person who actually has breakfast ready without setting an alarm. Make a batch this weekend, and you might just trick yourself into feeling like you've got it all figured out.

Frequently Asked Questions

Can I make these egg muffins ahead of time?

Yes, these muffins are perfect for meal prep. Once cooled completely, store them in an airtight container in the refrigerator for up to 5 days. They also freeze well—just thaw overnight in the fridge and reheat before serving.

What vegetables can I add to egg muffins?

Bell peppers and onions are the base, but you can easily add spinach, mushrooms, diced tomatoes, or zucchini. Just make sure to dice vegetables small and remove excess moisture from ingredients like mushrooms or spinach.

Can I make these muffins without bacon?

Absolutely! You can substitute cooked sausage or ham, or make them vegetarian by omitting meat entirely and adding extra vegetables like spinach, mushrooms, or sun-dried tomatoes for additional flavor.

How do I prevent the muffins from sticking to the tin?

Generously grease each muffin cup with cooking spray or olive oil before adding the egg mixture. After baking, let them cool for 5 minutes, then gently run a knife around the edges to loosen before removing.

What's the best way to reheat egg muffins?

The microwave is quickest—heat one muffin for 30-45 seconds or until warmed through. For a crispier texture, reheat in a 350°F oven for 8-10 minutes or use a toaster oven.

Can I use different types of cheese?

Yes! While cheddar is classic, you can experiment with feta for a tangy flavor, mozzarella for a milder taste, pepper jack for spice, or even goat cheese for a creamy twist.

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Breakfast Egg Muffins with Bacon

Golden egg muffins with cheddar, bacon, and bell peppers—perfect for busy mornings and meal prep.

Prep Time
10 Minutes
Cook Time
20 Minutes
Total Time
30 Minutes


Difficulty: Easy

Cuisine: American

Yield: 6 servings

Dietary: Gluten-Free, Low-Carb

Ingredients

Eggs & Dairy

01 6 large eggs
02 1/2 cup whole milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers (red, green, or yellow)
02 1/2 cup diced onions

Proteins

01 1/2 cup cooked and crumbled bacon

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon paprika

For Greasing

01 Cooking spray or olive oil

Instructions

Step 01

Preheat Oven: Preheat oven to 350°F (175°C).

Step 02

Prepare Muffin Tin: Grease a standard 12-cup muffin tin with cooking spray or olive oil.

Step 03

Combine Eggs and Milk: In a large bowl, whisk together eggs and milk until well combined and slightly frothy.

Step 04

Mix Ingredients: Stir in cheddar cheese, bell peppers, onions, bacon, salt, black pepper, garlic powder, and paprika until evenly mixed.

Step 05

Fill Muffin Tin: Pour the mixture into the prepared muffin tin, filling each cup approximately 2/3 full.

Step 06

Bake Muffins: Bake for 18-20 minutes, or until muffins are set and lightly golden. A toothpick inserted in the center should come out clean.

Step 07

Cool and Remove: Remove from oven and let cool for 5 minutes. Carefully loosen muffins with a knife if needed and remove from tin.

Step 08

Serve or Store: Serve warm, or cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat in the microwave before serving.

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Tools You'll Need

  • 12-cup muffin tin
  • Large mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains eggs and dairy (milk)
  • May contain pork depending on protein choice
  • Gluten-free as written, but always verify labels on sausage and other add-ins

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 150
  • Total Fat: 10 g
  • Total Carbohydrate: 2 g
  • Protein: 11 g

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